Microinjections

Pdf version with images

  • 3-AT sea water
  • PS-coated petri dish
  • Pipette and tips
  • Dejellied eggs
  • Sperm
  • Microinjection needle
  • Injection solution

Preparation of injection solution and needle

Prepare the following injection solution, preferably the same day it is going to be used.

Ingradient Final Quantity in 20 ul Volume to be added
Linearised construct 100ng Depends on construct concentration
gDNA 500ng Depends on construct concentration
KCl (1M) 0.12M 2.4 ul
Glycerol (50%) 20% 8 ul
Control dye (10%) 0.25% 0.5 ul
ddH2O - To add up to 20 ul

This is restriction enzyme digested plasmid. For Anpep_1, digest with KpnI. Confirm digestion product with gel electrophoresis and use the PCR purification kit to remove restriction enzyme from the DNA solution.

HindIII digested (overnight) and purified genomic DNA extracted from urchin epidermal tissue.

Texas Red dye diluted to 10%.

Injection solution should be centrifuged for 15 minutes at max speed immediately before filling the microinjection needle.

Preparation of the needle

Warning

Be careful never to touch either ends of the needle nor the coil that heats up the glass - it is HOT! Wear gloves!

We used a Narishige puller, model PP-830 with Narishige GD-1 glass capillary with filament with the following settings:

Two stage: 67.4°C, 80.2°C.

Weight: 248.01 g.

Setting of the height on the side, next to the stopper: 6.

6th grid setting

Needle puller machine

Step 1: Make sure that the coil adjuster is set to the maximum - the coil is the upper most position possible.

Step 2: Place a glass capillary through the coil and tighten the top screw. Then, push up the bottom part with the weight and screw in the bottom screw. For a two-stage pull (used in this protocol), the bottom part of the needle puller with the weight should not be touching the stopper. That is where the apparatus will arrive at the end of the first pull. See video below.

Step 3: Make sure that the coil is approximately at the middle of the capillary. This is important to end up with equal length needles. Adjust capillary position if needed. Do not adjust the position of the coil. Set up at the end of this step:

Correct capillary position

Step 4: Add the correct amount of weight to the bottom of the puller, 248.01 g in this protocol. We used the items below to achieve this weight.

Puller weights on the machine

Step 5: Push the red start button. The coil will heat up and the bottom of the puller will slowly drop onto the stopper. At this point, adjust the coil to be in the thinnest (melted) part of the capillary. This has to be precise! Remove the stopper and press the red start button again. The bottom of the puller will drop to the bottom and you’ll end up with two needles.

Video of using the needle puller

Step 6: Carefully remove the two needles by loosening the screws and taking them out sideways to avoid touching anything with the needle (it will very likely break due to the slightest touch). Place the needles in a petri dish with a folded tape on the bottom.

(a) Storing pulled needles

(b) Pulled needle ends

Figure 1: Pulled needles

Filling the needle

To fill the needles, pipette up 0.5 ul of injection solution. Use a 10ul pipette tip. Make sure to get the liquid from the top/middle of the tube in order to avoid any precipitate stuck to the bottom/sides of the tube during the centrifugation.

Put a piece of clay on the side of a table and push the needle upside down into it. Fill needle by touching the end of the needle with the tip of the pipette and pushing out the liquid with the pipette. Make sure that the liquid enters the needle instead of just sitting on top. Wait a few minutes for the solution to reach the bottom of the needle.

Filling needles

Mount needle onto the macromanipulator:

(a) Insert needle into needle holder, end first, make sure needle end is visible

(b) Needle in needle holder

Figure 2: Using the needle holder (aka grip head)

(a) Take off capillary holder (metal rod) and screw in needle holder

(b) Make sure that the capillary holder is at 30°

Figure 3: Setting up macromanipulator

The microinjection setup

(a)

(b)

Figure 4: Confocal microscope set up

Preparing sea water

For embryonic development:

Prepare a beaker (1000 ml) with sea water (12°C, RO + instant ocean salt). Check for correct salinity (~33%)! Adjust salinity if needed. Place in 15°C fridge.

For during the microinjection:

Pour 25 ml of the filtered sea water into a 50 ml centrifuge tube and add 25ul of 1M 3-aminotriazole (3-AT) stock solution1 to it. “Label as 3AT filtered sea water”. Place the 3AT sea water on ice.

Preparing the petri dish

Take a PS-coated petri dish2, mark middle with a straight black line with marker on the outer side of the dish. Take a razor blade and make a cut parallel to the black line halfway between the black line and the edge of the dish on the inner side of the dish. This scratch will be important to break the injection needle to adjust the flow of solution as needed.

Prepared petri dish

Pipette 4 ml of 1 mM 3-AT sea water (prepared in the first step of “Collecting eggs and sperm”) into the PS-coated dish using a transfer pipette.

Place petri dish under microscope, such that the scratch mark is on the left.

Switch on the microscope and the FemtoJet 4i. Make sure to detach the injection tube first!

(a) Switch on power strip to switch on microscope

(b) Switch on FemtoJet with the button on the back

(c) FemtoJet starts to build up pressure automatically, make sure tube is disconnected

Figure 5: Turning on equipment

Once the pressure has built up, attach the injection tube to the FemtoJet (TODO note about the ring size). If you see the error message below, make sure that the injection tube is correctly attached to the FemtoJet, and that the needle in the needle holder is all the way in and the tube is screwed on right.

Microinjector error

Default microinjector settings: Manual, 120, 40.

Lower needle into the sea water using the macromanipulator. Once the needle touches the water, find the needle through the microscope and lower/adjust focus until the needle touches the bottom of the petri dish. Navigate to the scratch mark. Gently touch the scratch with the end of the needle to break it very slightly. Check with the fluorescent light that there is a good flow of solution.

(a) Broken needle with scratch mark

(b) High speed of injection solution flow, this will be hard to work with

(c) Ideal speed of injection solution flow

Figure 6: Setting up needle in the sea water

Rowing the eggs and fertilization

Lift the needle out of the liquid using the macromanipulator to avoid breaking the needle during rowing of the eggs.

Row 10ul of dejellied eggs in a straight line using a 10 ul pipette tip. If the eggs have been sitting in the glass beaker for a while, they tend to stick to the bottom and pipetting up with the 10ul pipette tip might become difficult. Use a 3ml transfer pipette to pipette up and down near the eggs to stir them up.

Stir eggs with transfer pipette

Row the eggs on the petri dish parallel and in-between the two lines mentioned above (marker and scratch mark lines) using a pipette. Row the eggs right before the injections, because fertilization problems may occur due to prolonged exposure to 3-AT sea water. Gently press the tip of the pipette to the bottom of the petri dish on the top, and move down in a line while continuously pushing out the eggs from the pipette tip.

Row eggs in the petri dish

Find the eggs with the microscope. Lower the needle back into the sea water and gently poke an egg to make sure they are stuck to the bottom.

Dilute and activate the sperm by adding 1ul of sperm into 100ul of sea water and mixing the water with the pipette tip for a few minutes until there are no chunks left and the solution is opaque and homogeneous. Add 10ul of diluted sperm directly on top of the top eggs. Submerge the tip and expel the sperm directly above, but be careful not to touch the eggs. Only fertilize a portion of the eggs at a time since the fertilized eggs become hardened and impossible to inject 10-15 minutes after fertilization. Once the fertilized eggs are injected and you move down to unfertilized eggs, repeat this step including the dilution of the sperm as after 10-15 minutes the activated sperm become less fertile.

Fertilized eggs with fertilization envelop

Microinjection of fertilized eggs

Once the eggs are fertilized (the fertilization envelop appears), push the needle against a fertilized egg such that it makes a dent in the middle of the cell.

Hit the side of the microscope with your hand to make the needle enter the cell. You might need to hit it repeatedly.

You can tell that the needle has entered the cell if:

  1. you see the tension of the cell wall is released and the dent created by the needle disappears

  2. you see some movement inside the cell as the flow of the injection solution from the needle in disturbing the cellular content

After pressing the pedal, you should see a light area appear around the needle - this is called the injection bolus. Once the size for the injection bolus reaches 1/4 of the volume of the cell, pull out the needle. The cell should remain intact without anything flowing out of it. The injection bolus should disappear after 30 sec - 1 min.

Move to the next cell using the micromanipulator and the stage controller. Repeat.

Microinjection of fertilized eggs. Note: in this video the injection bolus didn’t reach the appropiate 1/4 size.

When done (fertilized eggs hardened or injected enough eggs), remove the dish from the stage and carefully aspirate out water using a transfer pipette.

Do not let the zygotes dry. Quickly add fresh prechilled sea water (from the 15°C fridge) to cover the dish. Label the petri dish (your name, date, time in hours and minutes, number of eggs injected, type of injection solution used). Incubate the embryos at 15°C. It is recommended to put the petri dishes with the embryos in sealed boxes with a wet paper towel to minimize evaporation of water from the sea water.


  1. 3-AT stock soluion: Prepare 1 M stock solution of 3-aminotriazole (3-AT, MW = 84.08) by dissolving 0.84 g of 3-AT in 10 ml of ddH2O. This solution can be stored at 4 °C for up to 6 months.↩︎

  2. PS coated dishes: Prepare 1% solution of protamine sulfate (PS) by adding 0.5 g of PS to 50 ml of deionized, distilled water (ddH2O) in a 50 ml conical tube. Shake well at high speed on a bench shaker at room temperature for 1-2 hr to ensure complete dissolution of PS. This solution can be stored at 4 °C for at least 3 months (make sure to completely dissolve gel-like precipitate before each use). Take a sleeve of 60 mm x 15 mm polystyrene Petri dishes and lay out both lids and bottoms on the bench. Warm up PS solution to room temperature. Pour 1% PS solution in each dish (both bottoms and lids can be used) just enough to cover the surface, leave for at least 2 min. The leftover PS solution can be reused many times within 3 months when stored at 4°C. Place PS-treated dishes in a beaker filled with distilled water (dH2O). Leave the beaker under running dH2O for at least 10 min. PS-coated dishes can be used immediately or air dry for storage. Cover them to prevent dust accumulation. They can be stored at room temperature for 1 month.↩︎